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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_111990267_111990376_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
111990267 - 111990376
Intron Length:
110

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAAGTAAT
5'SS Class:
major
3'SS Sequence:
ATTCCCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
CAGCTGTTAATT
Flanking Amino Acid:
DLFQGDIMLPKQQRNAIRNE
Intron Amino Acid Position:
64

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1.1
80.4
34
Major BPS
84.4
0.85
1
84
34.5
Major PPT
84.4
0.77
0.8
81.3
29.8
Minor 5ss
40.3
-1.1
2.9
61.3
43
Minor BPS
47.7
-0
2
61.54
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004740
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004939
111988823 - 112004762
15940