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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_111990456_111990784_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
111990456 - 111990784
Intron Length:
329

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAATGCAA
5'SS Class:
major
3'SS Sequence:
ACATGTTTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGACAT
U12 Branch Point Sequence:
TTGTTGTTGACA
Flanking Amino Acid:
PIPYILGNDLDLNAKGVILQ
Intron Amino Acid Position:
90

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
67.7
39
Major BPS
67.6
0.44
1.2
75
40
Major PPT
75.1
0.57
1
65.6
44.7
Minor 5ss
30.1
-2.3
3.2
38.5
46.5
Minor BPS
58.4
0.26
2.1
73.38
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004740
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004939
111988823 - 112004762
15940