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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_111990903_111992501_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
111990903 - 111992501
Intron Length:
1599

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGGTTA
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTTTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTGAC
U12 Branch Point Sequence:
CTGACAGTAAGA
Flanking Amino Acid:
KTYIFFIKGSGCWSMVGDLQ
Intron Amino Acid Position:
129

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
1
75.7
36.7
Major BPS
72.6
0.56
0.9
63.1
35.8
Major PPT
84.5
0.78
0.7
83.4
24.9
Minor 5ss
39.9
-1.1
3.3
47.1
48.3
Minor BPS
41.1
-0.6
2.4
52.7
45.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004740
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004939
111988823 - 112004762
15940