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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_112001879_112003308_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
112001879 - 112003308
Intron Length:
1430

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
ATTCTCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
CAGTTCTTATTT
Flanking Amino Acid:
FTTNKDQVISGSNGTIIWGK
Intron Amino Acid Position:
537

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.4
1.14
0.6
94.3
17.7
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
86.6
0.82
0.7
81.2
30
Minor 5ss
38.6
-1.3
3.4
57.8
46.8
Minor BPS
57
0.3
1.6
68.04
43.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004740
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004939
111988823 - 112004762
15940