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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_112028215_112029476_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
112028215 - 112029476
Intron Length:
1262

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTTGG
5'SS Class:
major
3'SS Sequence:
TGTCTGATACTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTTAT
U12 Branch Point Sequence:
TCTGTCTGATAC
Flanking Amino Acid:
MNISSINVTAVCPPSDENVS
Intron Amino Acid Position:
110

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
65.8
42.7
Major BPS
79.1
0.72
1
69.3
38.4
Major PPT
63.7
0.31
1
56.3
43.3
Minor 5ss
32.8
-2
3.1
40.1
46
Minor BPS
45.3
-0.3
1.8
55.66
42.7

Associated Gene:

Gene:
ADGRF5
Ensembl Gene ID:
ENSAPLG00000004634
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019507
112010742 - 112048229
37488