About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_112054482_112058601_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
112054482 - 112058601
Intron Length:
4120

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
TGG|GCAAATTTT
5'SS Class:
major
3'SS Sequence:
TAAATACTCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATACAA
U12 Branch Point Sequence:
CACACCTAAATA
Flanking Amino Acid:
KGAKSWLELPGSHSLHIQMS
Intron Amino Acid Position:
91

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1.2
74.6
41.4
Major BPS
57
0.17
0.9
65
30.8
Major PPT
65.8
0.36
1
55.5
44.2
Minor 5ss
34.7
-1.7
4.1
49.3
47
Minor BPS
50.4
0.01
1.7
56.7
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019835
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018897
112054307 - 112059012
4706