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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_112085424_112091611_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
112085424 - 112091611
Intron Length:
6188

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAATGCTG
5'SS Class:
major
3'SS Sequence:
TCTGTCTGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAC
U12 Branch Point Sequence:
GCACATCTAACG
Flanking Amino Acid:
IRGLMEDTTPVQMQPQWQMQ
Intron Amino Acid Position:
475

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.9
0.45
1.1
57.5
46.7
Major BPS
75.8
0.64
0.9
75.6
25.3
Major PPT
77.7
0.62
0.9
72.7
37.5
Minor 5ss
34.9
-1.7
3.4
48.5
47.1
Minor BPS
43.7
-0.6
1.8
44.42
40.8

Associated Gene:

Gene:
TNFRSF21
Ensembl Gene ID:
ENSAPLG00000003358
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020824
112080846 - 112109356
28511