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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_112168339_112169228_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
112168339 - 112169228
Intron Length:
890

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCTTCT
5'SS Class:
major
3'SS Sequence:
CATTTCATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
CCATTCTGCATT
Flanking Amino Acid:
KKDAFMPFSAGRRICAGETL
Intron Amino Acid Position:
435

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1.2
72.5
39.7
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
81.4
0.71
0.8
78.2
34.5
Minor 5ss
47.3
-0.3
2.8
68.6
42
Minor BPS
46.5
-0.1
1.9
60.49
43.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015871
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016564
112168025 - 112177346
9322