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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_112169371_112169577_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
112169371 - 112169577
Intron Length:
207

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGATGC
5'SS Class:
strong_major
3'SS Sequence:
TCTTGTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATTAT
U12 Branch Point Sequence:
TATTTTTGCACA
Flanking Amino Acid:
VILKDYFIPKGTYIIPLLIS
Intron Amino Acid Position:
388

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.8
72
34.3
Major BPS
68.1
0.45
1
58.1
38.5
Major PPT
88.8
0.87
0.7
83.9
31
Minor 5ss
32.8
-2
3
41.8
45
Minor BPS
51.2
0.03
1.9
68.7
37.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015871
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016564
112168025 - 112177346
9322