About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_112174125_112175221_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
112174125 - 112175221
Intron Length:
1097

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTTAG
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTGTGTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
CTGCACTGAAAT
Flanking Amino Acid:
PIFEDLTKGYGLVFAHGENW
Intron Amino Acid Position:
117

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
72.8
34.5
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
75.5
0.57
1
75.9
38
Minor 5ss
34.2
-1.8
2.8
37
41.8
Minor BPS
48.2
-0
1.8
65.02
44.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015871
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016564
112168025 - 112177346
9322