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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_112175385_112177139_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
112175385 - 112177139
Intron Length:
1755

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGCCATT
5'SS Class:
major
3'SS Sequence:
CTTCCTCTGTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CAAGTTTTAAAT
Flanking Amino Acid:
LKRPYKTYLQLSEEYGPVYS
Intron Amino Acid Position:
63

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.7
0.46
1.2
72.7
44.5
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
77
0.61
0.9
76.7
31.9
Minor 5ss
49.5
-0
3
74.6
41.7
Minor BPS
51.1
0.11
1.5
62.32
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015871
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016564
112168025 - 112177346
9322