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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_112179822_112180105_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
112179822 - 112180105
Intron Length:
284

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCTTCT
5'SS Class:
major
3'SS Sequence:
CATTTCATTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ACTCTCTTACAG
Flanking Amino Acid:
KKDAFMPFSAGRRICAGETL
Intron Amino Acid Position:
435

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1.2
72.5
39.7
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
79.6
0.67
0.9
70.5
39.6
Minor 5ss
47.3
-0.3
2.8
68.6
42
Minor BPS
47.9
-0.3
1.8
51.89
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015676
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016353
112179082 - 112187462
8381