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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_112180657_112180823_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
112180657 - 112180823
Intron Length:
167

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTGGA
5'SS Class:
major
3'SS Sequence:
GTTTCTTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATGTAT
U12 Branch Point Sequence:
GTTTCTTTCACA
Flanking Amino Acid:
LLMMKYPEIQKKVQDEIEQV
Intron Amino Acid Position:
326

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1.1
66.1
40.1
Major BPS
63.7
0.34
1.4
63.7
43.9
Major PPT
84.7
0.78
0.8
79.7
32.4
Minor 5ss
33.3
-1.9
3.2
36.6
41.7
Minor BPS
70
0.62
1.7
79.83
36.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015676
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016353
112179082 - 112187462
8381