Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_112184706_112186149_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

112184706 - 112186149

Intron Length:

1444

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGTGCA

5'SS Class:

strong_major

3'SS Sequence:

TTTTCATTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTCAT

U12 Branch Point Sequence:

TGTGCTTTCATT

Flanking Amino Acid:

QIVKETGKGKGVIFSYGENW

Intron Amino Acid Position:

117

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.3

0.97

0.7

80.2

27.1

Major BPS

100

1.24

0.5

100

Major PPT

91.2

0.93

0.7

89.3

26.1

Minor 5ss

27.5

-2.6

32.5

42.3

Minor BPS

57.1

0.3

1.8

75.88

41.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000015676

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016353

112179082 - 112187462

8381