About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_112197016_112197835_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
112197016 - 112197835
Intron Length:
820

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAGTC
5'SS Class:
strong_major
3'SS Sequence:
CACTTCTGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
CTCTATTCAATG
Flanking Amino Acid:
LVDRTGKFSMVLVQNATLAG
Intron Amino Acid Position:
262

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
75.1
33.1
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
74
0.54
0.9
68.7
36.9
Minor 5ss
35.1
-1.7
3.5
47.6
42.6
Minor BPS
47.7
-0.3
1.8
51.82
43.5

Associated Gene:

Gene:
RHAG
Ensembl Gene ID:
ENSAPLG00000015305
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015981
112192685 - 112208667
15983