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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_112198000_112198751_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
112198000 - 112198751
Intron Length:
752

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TATGTCCATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TAGTCTTTATTT
Flanking Amino Acid:
TYHSDLFAMIGALFLWIFWP
Intron Amino Acid Position:
207

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
85
26.1
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
70.3
0.46
0.9
67.7
38.9
Minor 5ss
35.2
-1.7
2.7
39.2
40.5
Minor BPS
64.4
0.53
1.6
76.62
40.7

Associated Gene:

Gene:
RHAG
Ensembl Gene ID:
ENSAPLG00000015305
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015981
112192685 - 112208667
15983