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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_112198900_112199087_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
112198900 - 112199087
Intron Length:
188

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAACTA
5'SS Class:
major
3'SS Sequence:
GTCCCTGATACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATAAAT
U12 Branch Point Sequence:
TTGGTATTATTT
Flanking Amino Acid:
NEHLVTGIFQATDVGASMTI
Intron Amino Acid Position:
158

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.1
65.2
40.7
Major BPS
74.5
0.61
1
79.6
29.1
Major PPT
67.5
0.39
1
60.7
39.5
Minor 5ss
33.8
-1.8
3.5
47.8
47.6
Minor BPS
48
-0
1.9
68
43.6

Associated Gene:

Gene:
RHAG
Ensembl Gene ID:
ENSAPLG00000015305
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015981
112192685 - 112208667
15983