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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_112199239_112200463_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
112199239 - 112200463
Intron Length:
1225

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTACATATG
5'SS Class:
major
3'SS Sequence:
TGCTTAACTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
GTTTGCTTAACT
Flanking Amino Acid:
EDGKICVDINSMINADFSTA
Intron Amino Acid Position:
107

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
75.3
40.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
75
0.56
0.9
71.2
38.6
Minor 5ss
37.6
-1.4
3.1
50.7
45.8
Minor BPS
78.3
0.97
1.7
92.9
35.6

Associated Gene:

Gene:
RHAG
Ensembl Gene ID:
ENSAPLG00000015305
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015981
112192685 - 112208667
15983