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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_112200648_112208531_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
112200648 - 112208531
Intron Length:
7884

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTCAC
U12 Branch Point Sequence:
TTTGTAGTCACT
Flanking Amino Acid:
TGRQSEGLHPLFQDVHVMIF
Intron Amino Acid Position:
46

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
1.2
90.9
28.7
Major BPS
67.1
0.43
1.2
69.3
37.7
Major PPT
93.7
0.98
0.6
92.5
17.4
Minor 5ss
43
-0.8
2.9
59.7
38
Minor BPS
43.2
-0.4
2.6
71.98
45.2

Associated Gene:

Gene:
RHAG
Ensembl Gene ID:
ENSAPLG00000015305
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015981
112192685 - 112208667
15983