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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_112226693_112227382_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
112226693 - 112227382
Intron Length:
690

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TGTTCTATTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TATTTCATGATT
Flanking Amino Acid:
CPGHCDNGLCTNPCRHRDAF
Intron Amino Acid Position:
326

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
85
32.3
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
80.3
0.68
0.8
78.5
34.6
Minor 5ss
43.9
-0.7
2.9
66.1
38.6
Minor BPS
62.8
0.49
1.6
80.42
35.2

Associated Gene:

Gene:
CRISP2
Ensembl Gene ID:
ENSAPLG00000018429
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022502
112226155 - 112236803
10649