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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_112227472_112228159_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
112227472 - 112228159
Intron Length:
688

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCC|GTAAGTATT
5'SS Class:
major
3'SS Sequence:
TTTCAAATTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
TTTCTTTCAAAT
Flanking Amino Acid:
NYFYVCHYCPPGNNIMQVAA
Intron Amino Acid Position:
296

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1.3
82.1
37.7
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
78.9
0.65
0.9
75.1
38.4
Minor 5ss
43.5
-0.7
2.9
65.1
39.1
Minor BPS
58.5
0.35
1.6
78.7
37.2

Associated Gene:

Gene:
CRISP2
Ensembl Gene ID:
ENSAPLG00000018429
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022502
112226155 - 112236803
10649