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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_112228255_112228415_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
112228255 - 112228415
Intron Length:
161

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGATA
5'SS Class:
strong_major
3'SS Sequence:
TTTGATTCTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTATTTTTGATT
Flanking Amino Acid:
KNANVKSYAQLVWYNSYQVG
Intron Amino Acid Position:
265

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
80.5
33.7
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
83.1
0.75
0.8
76.8
37.1
Minor 5ss
41.9
-0.9
3.1
56.7
47.6
Minor BPS
71.1
0.75
1.1
82.58
32.6

Associated Gene:

Gene:
CRISP2
Ensembl Gene ID:
ENSAPLG00000018429
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022502
112226155 - 112236803
10649