About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_112228562_112229092_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
112228562 - 112229092
Intron Length:
531

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTACATAAA
5'SS Class:
major
3'SS Sequence:
TTTACTACTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
CCTACTTTACTA
Flanking Amino Acid:
ISPTDQRVIDGITCGENILL
Intron Amino Acid Position:
216

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.5
0.46
1.1
68
38.7
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
81.6
0.71
0.8
78.7
34.3
Minor 5ss
33.8
-1.8
3
41.7
45.1
Minor BPS
51.3
0.04
1.7
58.9
42

Associated Gene:

Gene:
CRISP2
Ensembl Gene ID:
ENSAPLG00000018429
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022502
112226155 - 112236803
10649