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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_112230858_112232819_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
112230858 - 112232819
Intron Length:
1962

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGACTA
5'SS Class:
strong_major
3'SS Sequence:
TACTGTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTAAA
U12 Branch Point Sequence:
CAATCATTTACT
Flanking Amino Acid:
VALIHQAEAQVYQSKQVDTP
Intron Amino Acid Position:
21

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
71.7
40.1
Major BPS
67.4
0.43
1.1
67.9
36.3
Major PPT
81.4
0.71
0.9
72.8
42
Minor 5ss
34.1
-1.8
3.5
47.2
48.2
Minor BPS
54.1
0.21
2
71.36
44.9

Associated Gene:

Gene:
CRISP2
Ensembl Gene ID:
ENSAPLG00000018429
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022502
112226155 - 112236803
10649