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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_112271174_112271835_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
112271174 - 112271835
Intron Length:
662

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTTTT
5'SS Class:
major
3'SS Sequence:
TATTCATTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTATTCATT
Flanking Amino Acid:
CPNACDNGLCTNPCKFQDLY
Intron Amino Acid Position:
259

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
82
32.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
84.8
0.78
0.8
81.9
34.4
Minor 5ss
48.3
-0.1
2.8
72.9
37.4
Minor BPS
59.4
0.38
2
84.39
36.6

Associated Gene:

Gene:
CRISP3
Ensembl Gene ID:
ENSAPLG00000014850
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043803
112270605 - 112281677
11073
ENSAPLT00000015523
112270605 - 112281677
11073