Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_11228667_11230648_R

Intron Information:

Intron Rank:

144384

Intron Class:

major

Intron Phase:

Intron Coordinates:

11228667 - 11230648

Intron Length:

1982

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCT|GTAAGTTGC

5'SS Class:

major

3'SS Sequence:

GCACAAATTTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTGAT

U12 Branch Point Sequence:

TTTTGCACAAAT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.8

0.56

1.1

66.5

40.1

Major BPS

91.3

1.03

0.7

79.6

35.6

Major PPT

61.8

0.27

55.6

43.2

Minor 5ss

43.5

-0.7

2.8

62.6

Minor BPS

48.5

-0

2.3

78.91

42.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000024966

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031684

11228347 - 11233573

5227