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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_112304668_112309218_R

Intron Information:

Intron Rank:
144430
Intron Class:
major
Intron Phase:
Intron Coordinates:
112304668 - 112309218
Intron Length:
4551

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGAGTT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCATGCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TTTTGTTTCATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.9
80.7
31.7
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
69.2
0.43
1
63.5
42.8
Minor 5ss
42.5
-0.8
3.5
64.3
47.2
Minor BPS
50.2
-0.1
2.2
66.31
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024990
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044183
112296106 - 112309767
13662
ENSAPLT00000035789
112303351 - 112309767
6417