Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_112309279_112309561_R

Intron Information:

Intron Rank:

144431

Intron Class:

major

Intron Phase:

Intron Coordinates:

112309279 - 112309561

Intron Length:

283

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCA|GTATGTATT

5'SS Class:

major

3'SS Sequence:

TTTTGTTTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AATTCAA

U12 Branch Point Sequence:

GAATTCAAAATT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.4

0.53

77.6

36.9

Major BPS

74.2

0.6

0.9

75.7

Major PPT

93.6

0.98

0.7

92.3

26.6

Minor 5ss

-0

2.5

74.1

35.5

Minor BPS

47.2

-0.1

1.9

63.44

40.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000024990

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044183

112296106 - 112309767

13662

ENSAPLT00000035789

112303351 - 112309767

6417