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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_112540838_112549590_F

Intron Information:

Intron Rank:
151003
Intron Class:
major
Intron Phase:
Intron Coordinates:
112540838 - 112549590
Intron Length:
8753

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGACCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCTAAAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
TTTTTTCTAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.8
74.2
36.1
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
76.5
0.6
1
80
31
Minor 5ss
29.2
-2.4
3.1
40
45.5
Minor BPS
61.3
0.35
1.7
76.84
33.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031122
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030782
112540501 - 112550348
9848