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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_11266691_11269675_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11266691 - 11269675
Intron Length:
2985

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCGGC
5'SS Class:
strong_major
3'SS Sequence:
TGTTTATCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TTCTGTTTATCT
Flanking Amino Acid:
AAPPLPGERADSEIVSSLPL
Intron Amino Acid Position:
35

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
70.6
41.4
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
83.6
0.76
0.8
77.4
36
Minor 5ss
36.7
-1.5
3.3
50.2
46.4
Minor BPS
57.6
0.32
2
79.06
43.7

Associated Gene:

Gene:
TMEM17
Ensembl Gene ID:
ENSAPLG00000006949
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007204
11266588 - 11270793
4206