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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_112696877_112697776_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
112696877 - 112697776
Intron Length:
900

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTTTGT
5'SS Class:
major
3'SS Sequence:
TTCTTCCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
CTTCTTTTCACT
Flanking Amino Acid:
TFPGLVHDAEIRHDGSNSYR
Intron Amino Acid Position:
14

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1
73.3
38.2
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
90.4
0.91
0.6
88.7
20.7
Minor 5ss
48.1
-0.2
2.5
67.9
42.9
Minor BPS
57.7
0.32
1.8
76.22
41

Associated Gene:

Gene:
TFAP2D
Ensembl Gene ID:
ENSAPLG00000014639
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015264
112696838 - 112746000
49163