About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_112697617_112697776_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
112697617 - 112697776
Intron Length:
160

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAAAG
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
CTTCTTTTCACT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
71.6
40.1
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
90.4
0.91
0.6
88.7
20.7
Minor 5ss
31.4
-2.1
3.1
39
46.4
Minor BPS
57.7
0.32
1.8
76.22
41

Associated Gene:

Gene:
TFAP2D
Ensembl Gene ID:
ENSAPLG00000014639
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034502
112697610 - 112746000
48391