Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_11269780_11270029_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11269780 - 11270029

Intron Length:

250

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGTCCT

5'SS Class:

strong_major

3'SS Sequence:

CTCTTCCCTCTAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATGAAA

U12 Branch Point Sequence:

AAAACTTCTACT

Flanking Amino Acid:

LSSVVMLQMKYAVLSDYYKF

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

95.3

1.07

0.7

84.4

33.5

Major BPS

57.6

0.19

1.3

67.9

36.3

Major PPT

77.8

0.63

0.7

70.1

30.9

Minor 5ss

36.9

-1.5

51.2

45.2

Minor BPS

46.4

-0.2

1.8

61.75

41.7

Associated Gene:

Gene:

TMEM17

Ensembl Gene ID:

ENSAPLG00000006949

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007204

11266588 - 11270793

4206