About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_112715776_112722983_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
112715776 - 112722983
Intron Length:
7208

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGTTT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTACCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
TTTTGTTTACCT
Flanking Amino Acid:
NVTLLTSLVEGEALHLARDF
Intron Amino Acid Position:
295

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
1
79.5
36.8
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
81
0.7
0.8
74.1
35.7
Minor 5ss
41.3
-1
3.7
63.6
48.1
Minor BPS
64.1
0.52
2
87.23
39

Associated Gene:

Gene:
TFAP2D
Ensembl Gene ID:
ENSAPLG00000014639
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036087
112697349 - 112746000
48652
ENSAPLT00000034502
112697610 - 112746000
48391
ENSAPLT00000015264
112696838 - 112746000
49163