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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_112729238_112745780_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
112729238 - 112745780
Intron Length:
16543

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGATTT
5'SS Class:
strong_major
3'SS Sequence:
TTCCCATTTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCCAT
U12 Branch Point Sequence:
TCCTTCCCATTT
Flanking Amino Acid:
LDIQRHLTHFSLITHGFGTP
Intron Amino Acid Position:
380

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
83.3
29.2
Major BPS
72.3
0.55
1.2
80.7
33.2
Major PPT
78.4
0.64
0.8
73.5
30.2
Minor 5ss
50
0
2.8
73.4
43.4
Minor BPS
43.2
-0.4
2
59.83
44.3

Associated Gene:

Gene:
TFAP2D
Ensembl Gene ID:
ENSAPLG00000014639
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036087
112697349 - 112746000
48652
ENSAPLT00000034502
112697610 - 112746000
48391
ENSAPLT00000015264
112696838 - 112746000
49163