About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_112772029_112776529_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
112772029 - 112776529
Intron Length:
4501

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTATA
5'SS Class:
strong_major
3'SS Sequence:
ATTCTGCTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAA
U12 Branch Point Sequence:
TTTTCTTCAATT
Flanking Amino Acid:
ENVKYEDIYEDRHDGVPSHS
Intron Amino Acid Position:
17

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.7
1.05
0.6
92.2
16.3
Major BPS
78.2
0.7
1
79.9
32.6
Major PPT
76.2
0.59
0.9
70.3
35.7
Minor 5ss
33.9
-1.8
2.8
41.8
44.8
Minor BPS
77.2
0.93
1.4
92.06
30.7

Associated Gene:

Gene:
TFAP2B
Ensembl Gene ID:
ENSAPLG00000013905
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014542
112771981 - 112797836
25856