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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_112776989_112782039_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
112776989 - 112782039
Intron Length:
5051

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGCAC
5'SS Class:
strong_major
3'SS Sequence:
TTTATATCCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ATGTTTTTATAT
Flanking Amino Acid:
IGHPGMEEVQSVEDANNSGM
Intron Amino Acid Position:
170

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.9
73
38.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
79.3
0.66
0.8
73.5
36
Minor 5ss
31
-2.2
3.3
41
45.6
Minor BPS
53.9
0.2
1.7
70.73
40.6

Associated Gene:

Gene:
TFAP2B
Ensembl Gene ID:
ENSAPLG00000013905
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014542
112771981 - 112797836
25856