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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_112790237_112792754_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
112790237 - 112792754
Intron Length:
2518

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGGC
5'SS Class:
strong_major
3'SS Sequence:
TTTGTAATTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TTCTTTGTAATT
Flanking Amino Acid:
NASLLGGVLRRAKSKNGGRS
Intron Amino Acid Position:
263

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.3
0.93
0.8
73.3
36.4
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
76.2
0.59
0.9
67.8
42.5
Minor 5ss
30.8
-2.2
3.3
41.8
45
Minor BPS
58.2
0.34
2
78.3
39.3

Associated Gene:

Gene:
TFAP2B
Ensembl Gene ID:
ENSAPLG00000013905
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014542
112771981 - 112797836
25856