Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_112795591_112797535_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

112795591 - 112797535

Intron Length:

1945

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTGAGTGTG

5'SS Class:

strong_major

3'SS Sequence:

CTCTTCCATGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTCTCAT

U12 Branch Point Sequence:

CATTCTTTCACC

Flanking Amino Acid:

HSRKNMLLATKQLCKEFTDL

Intron Amino Acid Position:

350

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.5

0.74

0.9

35.2

Major BPS

82.6

0.81

0.9

83.3

27.7

Major PPT

78.6

0.64

0.8

73.5

30.4

Minor 5ss

32.6

-2

3.3

40.4

Minor BPS

63.4

0.4

1.8

70.96

40.7

Associated Gene:

Gene:

TFAP2B

Ensembl Gene ID:

ENSAPLG00000013905

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014542

112771981 - 112797836

25856