About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_113131919_113134896_F

Intron Information:

Intron Rank:
143403
Intron Class:
major
Intron Phase:
Intron Coordinates:
113131919 - 113134896
Intron Length:
2978

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTACT
5'SS Class:
strong_major
3'SS Sequence:
TACTGTCTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAGTCAT
U12 Branch Point Sequence:
GTTGCCCTAGCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.8
86.2
29.3
Major BPS
68.2
0.45
1.1
69.4
37.7
Major PPT
75.4
0.57
0.9
69.8
36.3
Minor 5ss
44.5
-0.6
2.5
60.9
43.5
Minor BPS
50.8
0
2
68.12
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027262
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038943
113122779 - 113135045
12267
ENSAPLT00000038444
113120629 - 113135045
14417