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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_113198475_113199786_F

Intron Information:

Intron Rank:
134097
Intron Class:
major
Intron Phase:
Intron Coordinates:
113198475 - 113199786
Intron Length:
1312

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATCACC
5'SS Class:
major
3'SS Sequence:
TGTCATTTCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAT
U12 Branch Point Sequence:
AGATCATTACCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
71.7
38.4
Major BPS
82.2
0.8
0.9
81.6
27
Major PPT
78.2
0.64
0.9
72.7
37.1
Minor 5ss
40.7
-1
2.8
53.4
43.4
Minor BPS
52.6
0.06
1.9
64.1
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022074
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018798
113196989 - 113199893
2905