About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_113266489_113270710_R

Intron Information:

Intron Rank:
51
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
113266489 - 113270710
Intron Length:
4222

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGGAAA
5'SS Class:
major
3'SS Sequence:
TATTGCTATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TTGGAATTAATT
Flanking Amino Acid:
LKGSSEAVLKGLTEVQVIDG
Intron Amino Acid Position:
3493

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.1
0.5
1.2
68.7
37.3
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
76.3
0.59
1
70.4
40
Minor 5ss
34
-1.8
2.9
39.8
45.9
Minor BPS
53.4
0.19
1.9
73.95
43

Associated Gene:

Gene:
PKHD1
Ensembl Gene ID:
ENSAPLG00000013410
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014007
113257700 - 113495565
237866