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Intron Name: Anas_platyrhynchos_platyrhynchos_3_113270799_113272627_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

113270799 - 113272627

Intron Length:

1829

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGGATTT

5'SS Class:

strong_major

3'SS Sequence:

TTATTTTTCCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCTTAAT

U12 Branch Point Sequence:

AAGATCTTAATC

Flanking Amino Acid:

QPQIIFLDKKGRRVEELGPP

Intron Amino Acid Position:

3464

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.3

0.81

0.9

81.6

33.2

Major BPS

0.92

0.9

86.2

29.1

Major PPT

86.9

0.83

0.8

80.7

36.6

Minor 5ss

42.5

-0.8

3.4

64.3

47.2

Minor BPS

0.36

1.3

62.3

37.1

Associated Gene:

Gene:

PKHD1

Ensembl Gene ID:

ENSAPLG00000013410

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014007

113257700 - 113495565

237866