About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_113322103_113325743_R

Intron Information:

Intron Rank:
47
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
113322103 - 113325743
Intron Length:
3641

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATATGC
5'SS Class:
major
3'SS Sequence:
TCCTGCCTGCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCATAAT
U12 Branch Point Sequence:
TGTCTCATAATA
Flanking Amino Acid:
EKDKFYFHPASVQSSEDTMF
Intron Amino Acid Position:
3036

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
68.8
37.2
Major BPS
75.2
0.63
1.1
74.5
36.6
Major PPT
68.7
0.42
1
61.3
40.1
Minor 5ss
38.4
-1.3
3
51.4
45.1
Minor BPS
59.3
0.29
1.6
70.43
35.3

Associated Gene:

Gene:
PKHD1
Ensembl Gene ID:
ENSAPLG00000013410
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014007
113257700 - 113495565
237866