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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_113330355_113334226_R

Intron Information:

Intron Rank:
43
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
113330355 - 113334226
Intron Length:
3872

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATATTT
5'SS Class:
strong_major
3'SS Sequence:
CTTGGCATTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
ATTGATTTAATA
Flanking Amino Acid:
LGGNVAPGNDRILVEDEVDW
Intron Amino Acid Position:
2586

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
83.5
28.8
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
73.8
0.53
1
65.5
39.9
Minor 5ss
43.9
-0.7
3.1
65.3
45.8
Minor BPS
61.1
0.34
1.6
70.28
36.3

Associated Gene:

Gene:
PKHD1
Ensembl Gene ID:
ENSAPLG00000013410
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014007
113257700 - 113495565
237866