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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_113366938_113367439_R

Intron Information:

Intron Rank:
37
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
113366938 - 113367439
Intron Length:
502

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACACAG
5'SS Class:
major
3'SS Sequence:
CTCCCTTCTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
ATGTGTTTATTT
Flanking Amino Acid:
DNPLVSKQLQYSVTFSNFTT
Intron Amino Acid Position:
2353

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1.2
62.5
43.8
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
76.5
0.6
0.7
69
31.5
Minor 5ss
36.9
-1.5
3.1
47.4
48
Minor BPS
49.6
0.05
2
69.42
42.6

Associated Gene:

Gene:
PKHD1
Ensembl Gene ID:
ENSAPLG00000013410
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014007
113257700 - 113495565
237866