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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_113367618_113380486_R

Intron Information:

Intron Rank:
36
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
113367618 - 113380486
Intron Length:
12869

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAAGTAAC
5'SS Class:
major
3'SS Sequence:
TTTTTTCCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
TTTTTTTTTCCT
Flanking Amino Acid:
DLVFHRMSLHLKEAPDIPYN
Intron Amino Acid Position:
2293

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
76.1
32.7
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
92.5
0.96
0.6
85.6
29.1
Minor 5ss
38.6
-1.3
2.8
51.7
39.2
Minor BPS
45.5
-0.2
3.6
82.93
38.6

Associated Gene:

Gene:
PKHD1
Ensembl Gene ID:
ENSAPLG00000013410
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014007
113257700 - 113495565
237866