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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_113380734_113382520_R

Intron Information:

Intron Rank:
35
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
113380734 - 113382520
Intron Length:
1787

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTGTTCCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TGGTTCTGAACT
Flanking Amino Acid:
RTCSGCYQGQGGFTVRAEHL
Intron Amino Acid Position:
2211

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
0.9
76.7
33.9
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
78.3
0.64
0.8
70.3
36.3
Minor 5ss
30.1
-2.3
2.5
26.5
36
Minor BPS
69.8
0.7
1.4
81.42
39.9

Associated Gene:

Gene:
PKHD1
Ensembl Gene ID:
ENSAPLG00000013410
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014007
113257700 - 113495565
237866