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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_113382657_113385688_R

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
113382657 - 113385688
Intron Length:
3032

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCGCT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TGTTTCTTCATT
Flanking Amino Acid:
SFLIGHIGQKGGTCMSAGLK
Intron Amino Acid Position:
2166

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.9
78.8
35.5
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
87.4
0.84
0.7
85.5
27.4
Minor 5ss
39
-1.2
3.4
56.7
47.6
Minor BPS
67.5
0.63
1.7
83.97
37.3

Associated Gene:

Gene:
PKHD1
Ensembl Gene ID:
ENSAPLG00000013410
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014007
113257700 - 113495565
237866