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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_113385824_113387101_R

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
113385824 - 113387101
Intron Length:
1278

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTGTA
5'SS Class:
major
3'SS Sequence:
TGTTTTTATATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TATTCCTTTATT
Flanking Amino Acid:
TAWSSQGGAQIFRSSNLILQ
Intron Amino Acid Position:
2121

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
76
33
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
80.9
0.7
0.9
77.3
36.2
Minor 5ss
42.4
-0.8
3.1
58.1
46.4
Minor BPS
76.3
0.91
1.5
89.12
35.3

Associated Gene:

Gene:
PKHD1
Ensembl Gene ID:
ENSAPLG00000013410
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014007
113257700 - 113495565
237866